Develops and designs ORACLE databases for the Immunovirology and Pathogenesis Program.
Publications
Journal articles
Obeng BM; Hutchinson J; Shaik A; Chetchotisakd P; Azwa I; Wulan WN; Kumarasamy N; Wolff M; Bruguera J; Losso M; Kaplan R; Diallo MS; Eriobu N; Musoro G; Kumalawati J; Badamasi A; Fitriah M; Mulya DP; Law M; Matthews G; Di Giallonardo F; Kelleher AD; Lowe M; Kee Yeung JY, 2026, 'Regional Variations of Rates and Determinants of Drug Resistance Mutations in People Failing First-line Therapy for HIV-1: A Substudy from the D2EFT Phase 3b/4 Clinical Trial', Clinical Infectious Diseases, 82, pp. e693 - e704, http://dx.doi.org/10.1093/cid/ciaf739
2026
King JM; Giallonardo FD; Shaik A; McGregor S; Yeung JYK; Sivaruban T; Lee FJ; Cunningham P; Dwyer DE; Nigro SJ; Grulich AE; Kelleher AD, 2024, 'Low HIV drug resistance prevalence among recently diagnosed HIV-positive men who have sex with men in a setting of high PrEP use', Journal of the International AIDS Society, 27, http://dx.doi.org/10.1002/jia2.26308
2024
Nchinda N; Elangovan R; Yun J; Dickson-Tetteh L; Kirtley S; Hemelaar J; Isolation and Characterisation W-UNFH; Abimiku AG; Agwale S; Archibald C; Avidor B; Gabriela BM; Barre-Sinoussi F; Barugahare B; Belabbes EH; Bertagnolio S; Birx D; Bobkov AF; Brandful J; Bredell H; Brennan CA; Brooks J; Bruckova M; Buonaguro L; Buonaguro F; Buttò S; Buve A; Campbell M; Carr J; Carrera A; Carrillo MG; Celum C; Chaplin B; Charles M; Chatzidimitriou D; Chen Z; Chijiwa K; Cooper D; Cunningham P; Dagnra A; de Gascun CF; Del Amo J; Delgado E; Dietrich U; Dwyer D; Ellenberger D; Ensoli B; Essex M; Fleury H; Fonjungo PN; Foulongne V; Gadkari DA; Gao F; García F; Garsia R; Gershy-Damet GM; Glynn JR; Goodall R; Grossman Z; Guimarães ML; Hahn B; Hamers RL; Hamouda O; Handema R; He X; Herbeck J; Ho DD; Holguin A; Hosseinipour M; Hunt G; Ito M; Kacem MABH; Kahle E; Kaleebu P; Kalish M; Kamarulzaman A; Kang C; Kanki P; Karamov E; Karasi J-C; Kayitenkore K; Kelleher T; Kitayaporn D; Kostrikis LG; Kucherer C; Lara C; Leitner T; Liitsola K; Lingappa J; Linka M; de Rivera IL; Lukashov V; Maayan S; Mayr L; McCutchan F; Meda N; Menu E; Mhalu F; Mloka D; Mokili JL; Montes B; Mor O; Morgado M; Mosha F; Moussi A; Mullins J; Najera R; Nasr M; Ndembi N; Neilson JR; Nerurkar VR; Neuhann F; Nolte C; Novitsky V; Nyambi P; Ofner M; Paladin FJ; Papa A; Pape J; Parkin N; Parry C; Peeters M; Pelletier A; Pérez-Álvarez L; Pillay D; Pinto A; Quang TD; Rademeyer C; Raikanikoda F; Rayfield MA; Reynes J-M; de Wit TR; Robbins KE; Rolland M; Rousseau C; Salazar-Gonzales J; Salem H; Salminen M; Salomon H; Sandstrom P; Santiago ML; Sarr AD; Schroeder B; Segondy M; Selhorst P; Sempala S; Servais J; Shaik A; Shao Y; Slim A; Soares MA; Songok E; Stewart D; Stokes J; Subbarao S; Sutthent R; Takehisa J; Tanuri A; Tee KK; Thapa K; Thomson M; Tran T; Urassa W; Ushijima H; van de Perre P; van der Groen G; van Laethem K; van Oosterhout J; van Sighem A; van Wijngaerden E; Vandamme A-M; Vercauteren J; Vidal N; Wallace L; Williamson C; Wolday D; Xu J; Yang C; Zhang L; Zhang R, 2023, 'Global associations of key populations with HIV-1 recombinants: a systematic review, global survey, and individual participant data meta-analysis', Frontiers in Public Health, 11, pp. 1153638, http://dx.doi.org/10.3389/fpubh.2023.1153638
2023
Duette G; Hiener B; Morgan H; Mazur FG; Mathivanan V; Horsburgh BA; Fisher K; Tong O; Lee E; Ahn H; Shaik A; Fromentin R; Hoh R; Bacchus-Souffan C; Nasr N; Cunningham AL; Hunt PW; Chomont N; Turville SG; Deeks SG; Kelleher AD; Schlub TE; Palmer S, 2022, 'The HIV-1 proviral landscape reveals that Nef contributes to HIV-1 persistence in effector memory CD4+ T cells', Journal of Clinical Investigation, 132, http://dx.doi.org/10.1172/JCI154422
2022
Di Giallonardo F; Pinto AN; Keen P; Shaik A; Carrera A; Salem H; Selvey C; Nigro SJ; Fraser N; Price K; Holden J; Lee FJ; Dwyer DE; Bavinton BR; Geoghegan JL; Grulich AE; Kelleher AD; Guy R; Prestage G; Zablotska I; Holden J; Duck T; Cooper C; Holt M; de Wit J; Kaldor J; Wilson D; Brotherton A; Cooper DA; Crooks L; Whittaker B; Callander D; Madeddu D; Schmidt HM; Telfer B; Boyd M; McGill S; Patel P; Power C; Gordon T; Feeney L; Bath K; Mackie B; Cooper D, 2021, 'Subtype-specific differences in transmission cluster dynamics of HIV-1 B and CRF01_AE in New South Wales, Australia', Journal of the International AIDS Society, 24, pp. e25655, http://dx.doi.org/10.1002/jia2.25655
2021
Pinto A; Carrera A; Salem H; Thapa K; Shaik A; Petoumenos K; Cunningham P; Garsia R; Dwyer D; Cooper DA; Kelleher A, 2021, 'Evolution of HIV-1 Surveillance Drug Resistance Mutations over 10 Years in New South Wales, Australia', AIDS Research and Human Retroviruses, 37, pp. 897 - 902, http://dx.doi.org/10.1089/aid.2016.0301
2021
Elangovan R; Jenks M; Yun J; Dickson-Tetteh L; Kirtley S; Hemelaar J; Isolation and Characterisation W-UNFH; Abimiku AG; Agwale S; Archibald C; Avidor B; Barbás MG; Barre-Sinoussi F; Barugahare B; Belabbes EH; Bertagnolio S; Birx D; Bobkov AF; Brandful J; Bredell H; Brennan CA; Brooks J; Bruckova M; Buonaguro L; Buonaguro F; Buttò S; Buvé A; Campbell M; Carr J; Carrera A; Carrillo MG; Celum C; Chaplin B; Charles M; Chatzidimitriou D; Chen Z; Chijiwa K; Cooper D; Cunningham P; Dagnra A; de Gascun CF; Del Amo J; Delgado E; Dietrich U; Dwyer D; Ellenberger D; Ensoli B; Essex M; Fleury H; Fonjungo PN; Foulongne V; Gadkari DA; Gao F; García F; Garsia R; Gershy-Damet GM; Glynn JR; Goodall R; Grossman Z; Guimarães ML; Hahn B; Hamers RL; Hamouda O; Handema R; He X; Herbeck J; Ho DD; Holguin A; Hosseinipour M; Hunt G; Ito M; Kacem MABH; Kahle E; Kaleebu P; Kalish M; Kamarulzaman A; Kang C; Kanki P; Karamov E; Karasi J-C; Kayitenkore K; Kelleher T; Kitayaporn D; Kostrikis LG; Kucherer C; Lara C; Leitner T; Liitsola K; Lingappa J; Linka M; de Rivera IL; Lukashov V; Maayan S; Mayr L; McCutchan F; Meda N; Menu E; Mhalu F; Mloka D; Mokili JL; Montes B; Mor O; Morgado M; Mosha F; Moussi A; Mullins J; Najera R; Nasr M; Ndembi N; Neilson JR; Nerurkar VR; Neuhann F; Nolte C; Novitsky V; Nyambi P; Ofner M; Paladin FJ; Papa A; Pape J; Parkin N; Parry C; Peeters M; Pelletier A; Pérez-Álvarez L; Pillay D; Pinto A; Quang TD; Rademeyer C; Raikanikoda F; Rayfield MA; Reynes J-M; de Wit TR; Robbins KE; Rolland M; Rousseau C; Salazar-Gonzales J; Salem H; Salminen M; Salomon H; Sandstrom P; Santiago ML; Sarr AD; Schroeder B; Segondy M; Selhorst P; Sempala S; Servais J; Shaik A; Shao Y; Slim A; Soares MA; Songok E; Stewart D; Stokes J; Subbarao S; Sutthent R; Takehisa J; Tanuri A; Tee KK; Thapa K; Thomson M; Tran T; Urassa W; Ushijima H; van de Perre P; van der Groen G; van Laethem K; van Oosterhout J; van Sighem A; van Wijngaerden E; Vandamme A-M; Vercauteren J; Vidal N; Wallace L; Williamson C; Wolday D; Xu J; Yang C; Zhang L; Zhang R, 2021, 'Global and Regional Estimates for Subtype-Specific Therapeutic and Prophylactic HIV-1 Vaccines: A Modeling Study', Frontiers in Microbiology, 12, pp. 690647, http://dx.doi.org/10.3389/fmicb.2021.690647
2021
Di Giallonardo F; Pinto AN; Keen P; Shaik A; Carrera A; Salem H; Selvey C; Nigro SJ; Fraser N; Price K; Holden J; Lee FJ; Dwyer DE; Bavinton BR; Grulich AE; Kelleher AD, 2020, 'Increased hiv subtype diversity reflecting demographic changes in the hiv epidemic in new south wales, australia', Viruses, 12, pp. 1402, http://dx.doi.org/10.3390/v12121402
2020
Di Giallonardo F; Pinto AN; Keen P; Shaik A; Carrera A; Salem H; Telfer B; Cooper C; Price K; Selvey C; Holden J; Bachmann N; Lee FJ; Dwyer DE; Duchêne S; Holmes EC; Grulich AE; Kelleher AD; Kelleher A; Prestage G; de Wit J; Guy R, 2019, 'Limited sustained local transmission of HIV-1 CRF01_AE in New South Wales, Australia', Viruses, 11, pp. 482, http://dx.doi.org/10.3390/v11050482
2019
Pinto AN; Grey P; Shaik A; Cooper DA; Kelleher AD; Petoumenos K, 2018, 'Early Treatment of Primary HIV Infection Is Associated with Decreased Mortality', AIDS Research and Human Retroviruses, 34, pp. 936 - 941, http://dx.doi.org/10.1089/aid.2017.0284
2018
Amin J; Becker S; Belloso W; Boffito M; Cooper D; Crabtree-Ramirez B; Duncombe C; Foulkes S; Hill A; Jessen H; Kumar S; Lee MP; Nwizu C; Read T; Rooney J; Schaffer K; Shahar E; Winston A; Wolff M; Young B; Abela C; Avihingsanon A; Boyd M; Carey D; Clarke A; Courtney-Vega K; Delfino M; Donaldson A; Emery S; Espinosa N; Johannesen T; Lin E; Losso M; Moricz A; Pett S; Phanupak P; Puls R; Pussadee K; Sutheerasak P; Tomlins L; Ubolyam S; bin Raja Azwa RIS; Bissio E; Calanni L; Chetchotisakd P; Doong N; Elliott J; Gazzard B; Kelly M; Laplume H; del Carmen Luna N; Lupo S; Messina OG; Mohapi L; Moore R; Nolan D; Orrell C; Perez C; Phanuphak P; Rockstroh J; Rowling D; Supparatpinyo K; Smith D; Villanueva JA; Vlahakis E; Kelleher T; Cunningham P; Merlin K; Yeung J; Shaik A; Fsadni B; Carrera A; Lograsso M; Gulick R; Dunn D; Dolan M; Kelleher A, 2015, 'Efficacy and safety of efavirenz 400 mg daily versus 600 mg daily: 96-week data from the randomised, double-blind, placebo-controlled, non-inferiority ENCORE1 study', Lancet Infectious Diseases, 15, pp. 793 - 802, http://dx.doi.org/10.1016/S1473-3099(15)70060-5
2015
ENCORE1 Study Group , 2014, 'Efficacy of 400 mg efavirenz versus standard 600 mg dose in HIV-infected, antiretroviral-naive adults (ENCORE1): a randomised, double-blind, placebo-controlled, non-inferiority trial.', Lancet, 383, pp. 1474 - 1482, http://dx.doi.org/10.1016/S0140-6736(13)62187-X
2014
Falster K; Gelgor L; Shaik A; Zablotska I; Prestage G; Grierson J; Thorpe R; Pitts M; Anderson J; Chuah J; Mulhall B; Petoumenos K; Kelleher A; Law M, 2008, 'Trends in antiretroviral treatment use and treatment response in three Australian states in the first decade of combination antiretroviral treatment', Sexual Health, 5, pp. 141 - 154, http://dx.doi.org/10.1071/SH07082
2008